Changelog

Source: NEWS.md

inti 0.6.9

• Improve templates for scihub()
• H2cal() was updated to include factors as formula
• Fix error in gdocs2qmd

inti 0.6.8

CRAN release: 2025-08-30

• Avoid label overlapping in the significance
• Update pkgdown web page
• Fix table export in gdocs2qmd()
• Update ANOVA table for kable()
• Exclude rmarkdown template ==> update to scihub research repository
  • Include Addins: SciHub

inti 0.6.7

CRAN release: 2025-02-26

• Rticles
• Fix table conversion when only is present one table
• Yupana
• Avoid different bar widths
• New project template info
• Increase y limits for better error visualization
• Re arrange statistic information
• Repare agricolae table summary anova
• Tarpuy
  • Update budget template
  • Update experimental plan information

inti 0.6.6

CRAN release: 2024-09-03

• Package
  • New function related outliers_remove() => “remove_outliers” to work with formula
  • New function related plot_diag() => “plot_diagnostic” to work with formula
• Rticles
  • Fix Tables and Figures order in final document
• Tarpuy
  • Change name of the trait tab from abbreviation to trait
  • Update traits tab for include two formats: date and mcategorical
  • Fix sort of the traits in field book app
  • New option for generate the qr-code for each plot

inti 0.6.5

CRAN release: 2024-05-16

• Package
  • Include Addins for Google authentication and renew process
• Rticles
  • Fix title position in article
  • Fix figure caption and cross reference

inti 0.6.4

CRAN release: 2024-02-05

• Update bootstrap in apps
• Tarpuy:
  • Alows to exclude or delete when or {sample} colums
  • Allow defaultValue for traits
• Rticles
  • Include images using markdown syntax ![]()

=> Fix if “defaultvalue” is in the trait table

inti 0.6.3

CRAN release: 2023-10-27

• gdocs2qmd()
  • change params: template ==> theme
  • reference-doc: style_rticle.docx
• Tarpuy
  • Field book design allows different number of rows
    
  • Design without replication (observation plots) ==> design_noreps()
  • Fix traits name order

inti 0.6.2

CRAN release: 2023-09-02

• gdocs2qmd()
  • Bug with: “Unknown element type at this position: UNSUPPORTED”
  • The function works for articles and thesis
  • Include the cover page using a table
  • Include R markdown templates from RStudio
  • Rticles vignettes updated

inti 0.6.1

CRAN release: 2023-05-30

• Tarpuy:
  • Include google sheet and docs in PLEX
  • Allow empty rows and without filling
  • Drop values in sheet traits with “X”
  • Only generate traits sheets
  • Seed is set by default
• Deprecated:
  • include_figure()
• New function
  • include_pdf()
• gdocs2qmd()
  • Word document with different output structure

inti 0.6.0

CRAN release: 2023-01-24

• Fix for dev dplyr (Thanks @hadley)
• tarpuy_plotdesign()
  • Autoconvert as factor for plot design
  • Default names in plot to “row” and “columns”
• New function: design_repblock for “rcbd”, “crd” for any factor number
• Yupana create by default the sheet locale = "en_US" to use the decimal point
• yupana_mvr allow to select specific numeric variables
• tarpuy_varlist adapted to field book app
• Tarpuy: new module for use the information in Field Book app https://play.google.com/store/apps/details?id=com.fieldbook.tracker
• Rename function: tarpuy_varlist ==> tarpuy_traits

inti 0.5.8

CRAN release: 2022-11-16

• gdocs2qmd(format) allow transform to quarto or Rmarkdown format

• Update RStudio download link to posit

• Yupana - fieldbook module:

  • Use “_” or “.” to separate the traits factors: yupana_reshape()
  • Load and Save in a specific sheet

inti 0.5.7

CRAN release: 2022-08-09

• Update functions bookdown to quarto:
  • figure2rmd() ==> figure2qmd()
  • table2rmd() ==> table2qmd()
  • gdocs2rmd() ==> gdocs2qmd()
• Fix plot_raw(): “length(x) = 2 > 1’ in coercion to ’logical(1)”
• Update jc_tombola()
• outliers_remove(drop.na = FALSE) avoid drop NA values by default
• H2cal() outliers are changed to NA in the data.frame
• yupana_mvr(): update function for correlation and PCA
• Yupana: update multivariate analysis

inti 0.5.6

CRAN release: 2022-05-19

• Package: web_table()
  • autoWidth = TRUE
  • columnwidth argument
  • width argument
• Fix plot_smr(): “length(x) = 2 > 1’ in coercion to ’logical(1)”
• New function: split_folder()
• Yupana: add scale and method in correlation plot

inti 0.5.5

CRAN release: 2022-04-01

• Yupana: update yupana_import() using if_any() instead across()
• Tarpuy: in dsg the column qr ==> barcode
• Tarpuy: update sheets names in intro section
• Tarypu: export field-book in specific sheet
• Tarpuy: select sheet for field-book sketch
• Tarpuy: create field-book only with the factor list
• Tarpuy: column with [] in design are omitted in the field-book generation
• CRAN comments: if (class(model) == “lmerMod”) => if ( is(model, “lmerMod”)

inti 0.5.4

CRAN release: 2022-02-22

• outliers_remove(): change cbind() by cbind.data.frame().
• Fix apps auth.
• Thanks to Uwe Ligges to allow consecutive CRAN updates.

inti 0.5.3

CRAN release: 2022-02-18

• Complete location name in experimental information.
• Avoid labels in axis and legend using "".
• Update vignettes using bookdown.
• Fix table summary in H2cal().
• Update diagnostic plot in plot_diag() to lm and lmerMod.
• Update code for logIn modules in apps.
• Update correlation graph in yupana.

inti 0.5.2

CRAN release: 2021-12-19

• Package
  • Fix CRAN comments
  • Fix path to install Tarpuy dependencies
  • Include huito logo in apps
  • Fix factors in Tarpuy field-book export
  • Update code from tarpuy_design()
  • Update barcode column for split using “_”
  • Update function tarpuy_plex()

inti 0.5.1

CRAN release: 2021-12-10

• Package
  • H2cal(): BLUEs from H2cal may be wrong if other fixed effects in the model (#10).
    • Thanks Jim Holland (@ncsumaize) for the suggestion to improve the function.
  • New functions: gdoc2rmd(), table2rmd(), figure2rmd()
    • Use Articul8 Add-ons from Google docs to build Rticles
  • Update pkgdown

inti 0.5.0

CRAN release: 2021-11-07

Changes are incompatible with the old versions.

• Package
  • yupana_export_smr ==> yupana_export()
    • Extract all the information from yupana_analysis
  • yupana_import_smr ==> yupana_import()
    • Import information from the web and yupana_analysis
  • Update function H2cal()
• Yupana
  • Include statistics and anova table in export results
  • Clean headers in export data, exclude “{}”
  • Update load/save interface
• Tarpuy
  • Variable list only include arguments with {}
    • You can exclude: {evaluation} or {sampling}

inti 0.4.4

CRAN release: 2021-10-01

• Package
  • jc_tombola()
    • Update function and selection paper by meeting
  • yupana_analysis()
    • Include last_factor selection
  • yupana_mvr()
    • Function not need last_factor
  • Include package version in the apps
  • Fixed navigation bar in the apps
• Yupana
  • PCA for individual in the bottom
  • Include version in the output table
  • Dimension for plots in multivariate analysis

inti 0.4.3

CRAN release: 2021-09-08

• Yupana
  • Show equation with adjusted R in scatter plot graph
  • sig include all the variables from the summary table
  • In plots if the number of reps is 1 the sig and error is “none”

inti 0.4.2

CRAN release: 2021-08-15

• Package
  • Include info plot_smr() and plot_raw
  • plot_smr()
    • Delete legend border
  • Transparent logos background
  • New vignette for coding with yupana
  • Update Rticles and Books template
  • Fix web_table() to export in xlsx
  • plot_raw() with scientific notation in labels
  • Include new data set potato
• Yupana
  • Legend position load correct
  • Headers with [] are excluded in the analysis

Agradecimiento a Pedro Barriga por sus sugerencias para mejorar yupana()

inti 0.4.1

CRAN release: 2021-06-25

• Package
  • plot_smr()
    • Add significance font size
  • plot_raw()
    • Allows vector with colors for plots
    • Include “scatter plot”
  • H2cal() include trial option for MET
  • New video for the version > 0.4.1
• Yupana
  • Add equations in regressions plot
  • Include scatter plot in “Exploratory” module

inti 0.4.0

CRAN release: 2021-05-25

Changes incompatible with the old versions.

Major changes

• Rticles
  • Deprecated: create_rticles() & rticles()
  • Deprecated shiny app: rticles
  • Now you can create your docs using Rmarkdown templates
    • Rticles
    • Books
  • Vignette for explain the dependencies to use rticles
• Yupana
  • Styled messages
  • New module: Exploratory
  • Update in the modules
    • No need fbsm
    • Reactivity in the analysis
  • Export model information
  • Overwrite graph info
  • Design with 3 factor use facet_grid()
  • Allow import/export information for plots
  • Reduce font size in the significance
• Tarpuy
  • Styled messages
  • Vignette for explain the modules in the app
  • Overwrite fieldbook info
• Package
  • New function: plot_raw()
    • Box plot graph
  • Update function: fieldbook_mvr –> yupana_mvr()
    • Can be used independently
  • symbols to internal data
    • Table to create footnotes
  • rename functions
  • Include new logo
  • Vignettes: comparison between H2cal() and asreml
  • Add data base for MET
  • Logo for the package and apps

Agradecimiento a Khaterine por la idea en el diseño de los logos

inti 0.3.0

CRAN release: 2021-04-24

• Yupana
  • Fix {arguments} from xlimits to ylimits
  • Update tables style
• Rticles
  • Update template files
• Package
  • Vignette for describe the arguments and options in Yupana
  • Delete redundant functions info_figure() & info_grahics()
  • Update functions: include_figure() & include_figure()
  • Update function plot_smr() include:
    • xtext: labels for the x level
    • gtext: labels for the group levels

inti 0.2.0

CRAN release: 2021-04-14

Changes incompatible with the old versions.

Major changes

• Package
  • Arguments changed in the syntax for fbsm and graphics.
• Yupana
  • Delete error messages in console when run the app
  • Change dependency: ggpubr –> cowplot
  • Multivariate analysis need factor levels n>2
  • Allows copy the Statistics table
• Yupana
  • Delete error messages in console when run the app
  • fix dates in experiments
• Rticles
  • update code for unzip Articul8 files
• Package
  • ´mean_comparison´ update
    • No remove the treatments column
    • Allows plot 3 factors comparison facet_grid()
    • New arguments for plot: xlimits, xrotation, dimension, opt
    • Delete redundant arguments; limits, brakes
    • Suggest use “*” instead of “:”
    • Include additional layers to the plot. e.g. coord_flip()
    • Save plot dimensions in the exported sheet
  • web_table fix resize table in web

Bug fixes

• Yupana & Tarpuy
  • add pkgs.R file to load dependencies in apps
• Tarpuy
  • fix auto-install packages in inti::tarpuy(T)

inti 0.1.3

CRAN release: 2021-03-20

Major changes

• Rticles
  • update bootstrap
  • include code section
• Yupana & Tarpuy
  • google auth verification
• Tarpuy
  • Include QR code in fieldbook
• Apps
  • bslib dependence install from CRAN
  • Include video for local installation
  • Suppress messages when load apps

inti 0.1.2

CRAN release: 2020-11-25

Major changes

• Package
  • Exclude package multtest from the depends
  • CRAN error: include_table
  • Search engine in the web page

inti 0.1.1

CRAN release: 2020-11-17

Major changes

• Yupana & Tarpuy
  • now apps work locally
  • update bootstrap
  • update packages dependencies for apps
• Yupana
  • Graphs: button for generate and refresh graphs
  • Fieldbook: plot_label in fieldbook summary for label axis in plots
  • Analysis: export analysis with sheet name
  • Analysis: round digits in export table
• Package
  • new functions: info_figure() & info_table()
  • update pkgdown documentation

Bug fixes

• Yupana & Tarpuy
  • fix problem with ‘cloud.json’
• Yupana
  • Multivariate: exclude variables without variation in PCA
  • Multivariate: exclude columns with all NA values
  • Graphs: app not stop if graph arguments are wrong
  • update from observeEvent() –> reactive()
• rticles
  • update app with the new bookdown release

inti 0.1.0

CRAN release: 2020-10-22

• First package release